PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.55SXN
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 278aa    MW: 31038.5 Da    PI: 6.6135
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.55SXNgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000333659123
                 EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                 ++C+ Cg+ F  + +L++H++t H
  Aradu.55SXN 36 FPCTACGEIFQKPLLLEQHQSTkH 59
                 89*******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.3693664IPR007087Zinc finger, C2H2
PROSITE patternPS0002803859IPR007087Zinc finger, C2H2
SuperFamilySSF563992.49E-1361277No hitNo description
Gene3DG3DSA:3.90.228.105.4E-562181IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene3DG3DSA:3.90.228.104.4E-5211277IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MNVPRRNLPG SLVRPESEIS GELDSGLFFP LRNDIFPCTA CGEIFQKPLL LEQHQSTKHA  60
VSELPGSDPG HNIVQIIFKS GWPEIRKFPI ITRILKIHNS QKILSRFEEY REAVKERAAL  120
HGGIMSTRRR DERCLADGNE LMRFHCSTFL CDLGLNGNSS ICSQQFCNIC GIIKSGFSPK  180
LDGISTLASS WRAHVSIPED IESEFRFMNV KRAMLVCRVI AGRVGSDSDE AEKEDGGSFD  240
SVMARGGDSG VYTRLDEEEL LVFNPRAVLP CFVIVYSV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015969424.10.0PREDICTED: uncharacterized protein LOC107492855
TrEMBLI1N0221e-163I1N022_SOYBN; Uncharacterized protein
STRINGGLYMA18G07330.11e-162(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106682936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-102C2H2 family protein